PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.12G158900.1.p
Common NameGLYMA_12G158900, LOC100800275
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 398aa    MW: 43139.3 Da    PI: 6.8963
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.12G158900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.14.4e-36431672104
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssa 82 
                          +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++          +       ++++ +  
  Glyma.12G158900.1.p  43 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELppwnptatpMQ------PPSQEIVHR 126
                          79**************************************************************87555444322......344444444 PP

                  TCP  83 snsssg......................kaaksaakskksqksa 104
                          +n+s g                      +++++++++    +++
  Glyma.12G158900.1.p 127 ENKSLGmddsltafscrgespafaaatrDSEQFSHPQV---EQN 167
                          44444455555677777776666543322222222111...111 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-3243170IPR005333Transcription factor, TCP
PROSITE profilePS5136932.53745103IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGEPQHPHQH HQQAAATPSR AAMRGGGGGE IVEVQGGHIV RSTGRKDRHS KVCTAKGPRD  60
RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI DQLAELPPWN PTATPMQPPS  120
QEIVHRENKS LGMDDSLTAF SCRGESPAFA AATRDSEQFS HPQVEQNENA NNISSSSISI  180
KYNSGSGFLP ASLDTDNIAE TIKTFFPVEA TTTSFQSYPP APPDLGQQDL RLSLQSFQDP  240
IMLHHQPQSH HEPVLFAGTA AAALGFDGGY GWSEHQHQNH HSEEQRLLYA GGNSGHGGGF  300
VFNTPAPVPA FGQFFSQRGP LQSSNTPSIR AWIDPSVDHH HHHHHYLSQL IHQGSVAGGS  360
GFSSGFSGFR IPARIQGEEE HDGVSDKPSS ASSDSRH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.346720.0cotyledon| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592557.10.0PREDICTED: transcription factor TCP3-like
SwissprotQ9MAH81e-102TCP3_ARATH; Transcription factor TCP3
TrEMBLK7LUU90.0K7LUU9_SOYBN; Uncharacterized protein
STRINGGLYMA12G20160.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-66TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3